Haruto Kirishima had a tranquil existence in the countryside, far from the bustling city. Then, out of nowhere, Yuzuki Eba arrived in his life from Tokyo to temporarily reside with her family. He was captivated by the recollections of their little time together before she unexpectedly vanished from his life, and he was filled with questions. Kimi no Iru Machi begins after Haruto relocates to Tokyo with his sister to seek a career as a chef. In actuality, he desires to be with Yuzuki. Things start very poorly however. When he comes, his sister's neighbor Mishima Asuka attacks him, mistaking him for an intruder. After the misunderstanding is clarified, though, his feelings continue to fluctuate. Is Eba, who avoids him for seemingly no reason, his ideal match, or is it Asuka?